Journal Papers

  1. V. A. Emanuele II and B. M. Gurbaxani, "Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data," BMC Bioinformatics 2010, Vol 11:512.
    paper cites
    Code/data for reproducibility: README code.zip (1.7M) data.zip (1.2G) results_ls.zip (23M) results_msw.zip (100M)
  2. V. A. Emanuele II and B. M. Gurbaxani, "Benchmarking currently available SELDI-TOF MS preprocessing techniques," Proteomics 2009, Vol. 9, No. 7, pp. 1754 - 1762.
    paper cites

Conference Papers/Posters

  1. G. Panicker, V. Emanuele II, B. Gurbaxani, D. Lee, and E. Unger, "Enroute to protein biomarker discovery for early-detection of cervical cancer," CDC Celebrates 10 Years of Public Health Genomics: Translating Gene Discoveries into Population Health Benefits Atlanta, GA, Jan 23, 2008.
  2. V. A. Emanuele II and B. M. Gurbaxani, "Comprehensive Performance Analysis of SELDI-TOF Mass Spectrometry Signal Processing Methods," Second Annual Symposium on Computational and Systems Biology Athens, GA, March 23, 2007.
  3. V. A. Emanuele II and B. M. Gurbaxani, "SELDI-TOF based protein profiling for early detection of cancer and biomarker discovery: an evaluation of currently available signal processing platforms," AACR Advances in Proteomics in Cancer Research, Amelia Island, FL, Feb 27 - Mar 2, 2007.
  4. V. A. Emanuele, V. Olman, B. Yan, Y. Xu, and G. T. Zhou, "An Approximate Bayesian Detection Scheme with Applications to Tandem Mass Spectrometry Data Analysis,"Proc. of the IEEE 12th Digital Signal Processing Workshop, Grand Teton, WY, Sept. 24 - 27, 2006, pp. 555 - 560.
    paper
  5. B. Yan, G. T. Zhou, P. Wang, Z. Liu, V. A. Emanuele II, V. Olman, and Y. Xu, "A Point-Process Model for Rapid Identification of Post-Translational Modifications", Pacific Symposium on Biocomputing, Grand Wailea, Maui, Hawaii, Jan 3 - 7, 2006, pp. 327 - 338
    paper
  6. B. Yan, G. T. Zhou, V. Olman, V. A. Emanuele II, and Y. Xu, "A Point Process model for Rapid & Blind Identification of Post Translational Modifications," First Annual Symposium on Computational and Systems Biology, Athens, GA, Nov 11, 2005
  7. V. A. Emanuele II, T. T. Tran, and G. T. Zhou, "A Fourier product method for detecting approximate tandem repeats in DNA," Proc. of the 2005 IEEE/SP 13th Workshop on Statistical Signal Processing, Bordeaux, France, July 17 - 20, 2005, pp. 1390 - 1395.
    paper cites
  8. T. T. Tran, V. A. Emanuele II, and G. T. Zhou, "Techniques for detecting approximate tandem repeats in DNA," Proc. of IEEE Int'l Conference on Acoustics, Speech, and Signal Processing (ICASSP '04), Montreal, Canada, May 17 - 21, 2004, pp. 449 -452.
    paper cites

Theses

  1. V. A. Emanuele II, Advancements in high throughput protein profiling using surface enhanced laser desorption/ionization time of flight mass spectrometry, Ph.D. Thesis, Georgia Institute of Technology, 2010.
    Advisor: G. Tong Zhou.
    link
  2. V. A. Emanuele II, L-Optimal Combinatoric Region Merging for Image Segmentation, Undergrad Thesis for Degree with Distinction, University of Delaware, 2002.
    Advisor: K. E. Barner.

Patents

  1. V. A. Emanuele II and B. M. Gurbaxani, "Use of detector response curves to optimize settings for mass spectrometry," Full Patent Applied for October 7, 2011 application number PCT/US2011/055376.
  2. V. A. Emanuele II and B. M. Gurbaxani, "Use of detector response curves to optimize settings for Matrix Assisted Laser Desorption/Ionization time-of-flight mass spectroscopy", US Patent Application No. 61390910, 2010.